PIGEAN validation inputs: gene-set libraries + gene reference files
Live from chase-yakaboski-1/pigean on version main. The publisher keeps editing it; link it to a project version to pin what you consume.
| Path | Format | Size | Rows | Columns |
|---|---|---|---|---|
| Achilles_fitness_decrease.gmt.gz | gz | 70.8 KB | — | — |
| Achilles_fitness_increase.gmt.gz | gz | 71.3 KB | — | — |
| Aging_Perturbations_from_GEO_down.gmt.gz | gz | 245.3 KB | — | — |
| Aging_Perturbations_from_GEO_up.gmt.gz | gz | 248.7 KB | — | — |
| Allen_Brain_Atlas_10x_scRNA_2021.gmt.gz | gz | 233.5 KB | — | — |
| Allen_Brain_Atlas_down.gmt.gz | gz | 4.0 MB | — | — |
| Allen_Brain_Atlas_up.gmt.gz | gz | 3.7 MB | — | — |
| ARCHS4_Cell-lines.gmt.gz | gz | 909.5 KB | — | — |
| ARCHS4_IDG_Coexp.gmt.gz | gz | 309.5 KB | — | — |
| ARCHS4_Kinases_Coexp.gmt.gz | gz | 415.6 KB | — | — |
| ARCHS4_TFs_Coexp.gmt.gz | gz | 1.6 MB | — | — |
| ARCHS4_Tissues.gmt.gz | gz | 717.4 KB | — | — |
| Azimuth_2023.gmt.gz | gz | 38.6 KB | — | — |
| Azimuth_Cell_Types_2021.gmt.gz | gz | 12.2 KB | — | — |
| Cancer_Cell_Line_Encyclopedia.gmt.gz | gz | 528.1 KB | — | — |
| CCLE_Proteomics_2020.gmt.gz | gz | 640.6 KB | — | — |
| CellMarker_2024.gmt.gz | gz | 150.9 KB | — | — |
| CellMarker_Augmented_2021.gmt.gz | gz | 209.1 KB | — | — |
| ChEA_2022.gmt.gz | gz | 2.4 MB | — | — |
| DepMap_CRISPR_GeneDependency_CellLines_2023.gmt.gz | gz | 930.1 KB | — | — |
| DepMap_WG_CRISPR_Screens_Broad_CellLines_2019.gmt.gz | gz | 425.8 KB | — | — |
| DepMap_WG_CRISPR_Screens_Sanger_CellLines_2019.gmt.gz | gz | 260.7 KB | — | — |
| Descartes_Cell_Types_and_Tissue_2021.gmt.gz | gz | 68.5 KB | — | — |
| Diabetes_Perturbations_GEO_2022.gmt.gz | gz | 300.3 KB | — | — |
| Disease_Perturbations_from_GEO_down.gmt.gz | gz | 741.2 KB | — | — |
| Disease_Perturbations_from_GEO_up.gmt.gz | gz | 760.9 KB | — | — |
| Disease_Signatures_from_GEO_down_2014.gmt.gz | gz | 308.3 KB | — | — |
| Disease_Signatures_from_GEO_up_2014.gmt.gz | gz | 307.3 KB | — | — |
| Drug_Perturbations_from_GEO_2014.gmt.gz | gz | 1.1 MB | — | — |
| Drug_Perturbations_from_GEO_down.gmt.gz | gz | 815.8 KB | — | — |
| Drug_Perturbations_from_GEO_up.gmt.gz | gz | 810.8 KB | — | — |
| ENCODE_and_ChEA_Consensus_TFs_from_ChIP-X.gmt.gz | gz | 273.1 KB | — | — |
| ENCODE_Histone_Modifications_2013.gmt.gz | gz | 276.1 KB | — | — |
| ENCODE_Histone_Modifications_2015.gmt.gz | gz | 2.7 MB | — | — |
| ENCODE_TF_ChIP-seq_2014.gmt.gz | gz | 10.2 MB | — | — |
| ENCODE_TF_ChIP-seq_2015.gmt.gz | gz | 4.4 MB | — | — |
| enrichr_filtered_all.gene_sets.list.local | local | 11.5 KB | — | — |
| Epigenomics_Roadmap_HM_ChIP-seq.gmt.gz | gz | 10.4 MB | — | — |
| ESCAPE.gmt.gz | gz | 842.2 KB | — | — |
| FANTOM6_lncRNA_KD_DEGs.gmt.gz | gz | 367.2 KB | — | — |
| Gene_Perturbations_from_GEO_down.gmt.gz | gz | 2.2 MB | — | — |
| Gene_Perturbations_from_GEO_up.gmt.gz | gz | 2.2 MB | — | — |
| GeneSigDB.gmt.gz | gz | 800.4 KB | — | — |
| Genome_Browser_PWMs.gmt.gz | gz | 481.0 KB | — | — |
| GlyGen_Glycosylated_Proteins_2022.gmt.gz | gz | 30.2 KB | — | — |
| GTEx_Aging_Signatures_2021.gmt.gz | gz | 201.5 KB | — | — |
| GTEx_Tissue_Expression_Down.gmt.gz | gz | 10.4 MB | — | — |
| GTEx_Tissue_Expression_Up.gmt.gz | gz | 8.0 MB | — | — |
| GTEx_Tissues_V8_2023.gmt.gz | gz | 113.0 KB | — | — |
| HMDB_Metabolites.gmt.gz | gz | 58.1 KB | — | — |
| HMS_LINCS_KinomeScan.gmt.gz | gz | 13.6 KB | — | — |
| HuBMAP_ASCTplusB_augmented_2022.gmt.gz | gz | 165.4 KB | — | — |
| HuBMAP_ASCT_plus_B_augmented_w_RNAseq_Coexpression.gmt.gz | gz | 75.0 KB | — | — |
| Human_Gene_Atlas.gmt.gz | gz | 152.0 KB | — | — |
| huMAP.gmt.gz | gz | 31.6 KB | — | — |
| impc.txt | txt | 441.5 KB | — | — |
| InterPro_Domains_2019.gmt.gz | gz | 67.9 KB | — | — |
| Kinase_Perturbations_from_GEO_down.gmt.gz | gz | 247.3 KB | — | — |
| Kinase_Perturbations_from_GEO_up.gmt.gz | gz | 247.2 KB | — | — |
| KOMP2_Mouse_Phenotypes_2022.gmt.gz | gz | 103.7 KB | — | — |
| L1000_Kinase_and_GPCR_Perturbations_down.gmt.gz | gz | 2.8 MB | — | — |
| L1000_Kinase_and_GPCR_Perturbations_up.gmt.gz | gz | 2.8 MB | — | — |
| Ligand_Perturbations_from_GEO_down.gmt.gz | gz | 212.0 KB | — | — |
| Ligand_Perturbations_from_GEO_up.gmt.gz | gz | 235.2 KB | — | — |
| lincs_aby.txt | txt | 742.3 KB | — | — |
| lincs_all.gene_sets.list.local | local | 529 B | — | — |
| lincs_cp.txt | txt | 889.8 MB | — | — |
| lincs_lig.txt | txt | 9.4 MB | — | — |
| lincs_oe.txt | txt | 42.2 MB | — | — |
| lincs_shRNA.txt | txt | 200.1 MB | — | — |
| lincs_siRNA.txt | txt | 210.6 KB | — | — |
| lincs_xpr.txt | txt | 172.8 MB | — | — |
| lncHUB_lncRNA_Co-Expression.gmt.gz | gz | 999.6 KB | — | — |
| MCF7_Perturbations_from_GEO_down.gmt.gz | gz | 310.1 KB | — | — |
| MCF7_Perturbations_from_GEO_up.gmt.gz | gz | 332.8 KB | — | — |
| mesh_full_textmining.txt | txt | 144.6 MB | — | — |
| mesh_no_gwas_and_no_drugs.txt | txt | 141.4 MB | — | — |
| Metabolomics_Workbench_Metabolites_2022.gmt.gz | gz | 7.8 KB | — | — |
| Microbe_Perturbations_from_GEO_down.gmt.gz | gz | 251.3 KB | — | — |
| Microbe_Perturbations_from_GEO_up.gmt.gz | gz | 276.8 KB | — | — |
| miRTarBase_2017.gmt.gz | gz | 1.1 MB | — | — |
| MoTrPAC_2023.gmt.gz | gz | 79.8 KB | — | — |
| mouse_2024.txt | txt | 2.1 MB | — | — |
| mouse_KO_2024.txt | txt | 1.5 MB | — | — |
| msigdb_c1.txt | txt | 335.5 KB | — | — |
| msigdb_c2_cp.txt | txt | 1.2 MB | — | — |
| msigdb_c2.txt | txt | 3.5 MB | — | — |
| msigdb_c3.txt | txt | 5.1 MB | — | — |
| msigdb_c4.txt | txt | 599.1 KB | — | — |
| msigdb_c5_nohp.txt | txt | 5.3 MB | — | — |
| msigdb_c6.txt | txt | 187.8 KB | — | — |
| msigdb_c7.txt | txt | 6.2 MB | — | — |
| msigdb_c8.txt | txt | 971.3 KB | — | — |
| msigdb_h.txt | txt | 43.6 KB | — | — |
| msigdb_nohp_all.gene_sets.list.local | local | 683 B | — | — |
| msigdb_nohp.txt | txt | 22.2 MB | — | — |
| NCBI37.3.plink.gene.exons.loc | loc | 11.5 MB | — | — |
| NCBI37.3.plink.gene.loc | loc | 672.4 KB | — | — |
| NCI-60_Cancer_Cell_Lines.gmt.gz | gz | 96.1 KB | — | — |
| NURSA_Human_Endogenous_Complexome.gmt.gz | gz | 557.7 KB | — | — |
| ocr_human.txt | txt | 2.7 MB | — | — |
| ocr_mouse.txt | txt | 6.9 MB | — | — |
| orpha.txt | txt | 762.0 KB | — | — |
| PanglaoDB_Augmented_2021.gmt.gz | gz | 59.7 KB | — | — |
| PerturbAtlas.gmt.gz | gz | 2.6 MB | — | — |
| Phosphatase_Substrates_from_DEPOD.gmt.gz | gz | 1.5 KB | — | — |
| pops_sparse_small.txt | txt | 228.5 MB | — | — |
| portal_gencode.gene.map | map | 4.3 MB | — | — |
| PPI_Hub_Proteins.gmt.gz | gz | 243.1 KB | — | — |
| ProteomicsDB_2020.gmt.gz | gz | 674.7 KB | — | — |
| Proteomics_Drug_Atlas_2023.gmt.gz | gz | 638.5 KB | — | — |
| refGene_hg19_TSS.subset.loc | loc | 1.2 MB | — | — |
| RNAseq_Automatic_GEO_Signatures_Human_Down.gmt.gz | gz | 3.2 MB | — | — |
| RNAseq_Automatic_GEO_Signatures_Human_Up.gmt.gz | gz | 3.2 MB | — | — |
| RNAseq_Automatic_GEO_Signatures_Mouse_Down.gmt.gz | gz | 3.2 MB | — | — |
| RNAseq_Automatic_GEO_Signatures_Mouse_Up.gmt.gz | gz | 3.2 MB | — | — |
| RNA-Seq_Disease_Gene_and_Drug_Signatures_from_GEO.gmt.gz | gz | 1.6 MB | — | — |
| rummageo.txt | txt | 1.1 GB | — | — |
| SILAC_Phosphoproteomics.gmt.gz | gz | 69.6 KB | — | — |
| string_notext_medium.txt | txt | 6.8 MB | — | — |
| SubCell_BarCode.gmt.gz | gz | 159.3 KB | — | — |
| SysMyo_Muscle_Gene_Sets.gmt.gz | gz | 438.2 KB | — | — |
| Tabula_Muris.gmt.gz | gz | 23.2 KB | — | — |
| Tabula_Sapiens.gmt.gz | gz | 41.1 KB | — | — |
| TargetScan_microRNA_2017.gmt.gz | gz | 2.3 MB | — | — |
| TargetScan_microRNA.gmt.gz | gz | 94.8 KB | — | — |
| TF-LOF_Expression_from_GEO.gmt.gz | gz | 1.2 MB | — | — |
| TF_Perturbations_Followed_by_Expression.gmt.gz | gz | 1.4 MB | — | — |
| TG_GATES_2020.gmt.gz | gz | 1.4 MB | — | — |
| The_Kinase_Library_2024.gmt.gz | gz | 503.6 KB | — | — |
| Tissue_Protein_Expression_from_Human_Proteome_Map.gmt.gz | gz | 62.0 KB | — | — |
| Tissue_Protein_Expression_from_ProteomicsDB.gmt.gz | gz | 439.5 KB | — | — |
| Transcription_Factor_PPIs.gmt.gz | gz | 54.9 KB | — | — |
| TRANSFAC_and_JASPAR_PWMs.gmt.gz | gz | 1.3 MB | — | — |
| TRRUST_Transcription_Factors_2019.gmt.gz | gz | 31.3 KB | — | — |
| Virus-Host_PPI_P-HIPSTer_2020.gmt.gz | gz | 347.3 KB | — | — |
| VirusMINT.gmt.gz | gz | 4.4 KB | — | — |
| Virus_Perturbations_from_GEO_down.gmt.gz | gz | 689.7 KB | — | — |
| Virus_Perturbations_from_GEO_up.gmt.gz | gz | 683.0 KB | — | — |